Is there any special thing I must do to make Post Affiliate Pro plugin recognize Paypal payments?

We have setup a hosted version of post affiliate pro and we successfully installed the module that you provide.   We have no issue with bank transfers / check payments but we can not figure out how to get paypal payments recognized.  The orders are made successfully and they get marked as complete but they never show up in our hosted account while bank transfers and manual payments do.  Is there something or a step we are missing to make that work?
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